PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00115g01228.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 568aa    MW: 64205.7 Da    PI: 6.2097
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00115g01228.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92.1e-07441490147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHH.HHT..TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar.tmg..kgRtlkqcksrwqky 47 
                               r+ W+t E ++lv++v ++G g+W+ I + ++g   +R+  ++k++w+++
  Peaxi162Scf00115g01228.1 441 RNCWSTPEVLKLVEGVSKYGVGRWHGIKSvYFGssVHRSSTNLKDKWRNL 490
                               789************************762566***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.191436495IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-10436498IPR009057Homeodomain-like
SMARTSM007174.0E-8440493IPR001005SANT/Myb domain
PfamPF002491.6E-5441490IPR001005SANT/Myb domain
SuperFamilySSF466894.34E-13443501IPR009057Homeodomain-like
CDDcd116604.52E-15444492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
EEVEQKSKMQ TASDSLEYSL KTPNASAMIF QHEPDQVVGA ASVYFASEEE AIGVEYLLAE  60
PVHDDIIDTL LDRNTCTFNV PKSYYLTEFS SKEPALTECG HGNSLINLSY VNQMAPWSGS  120
VSDGARQGSL TEEDKTRERF LDGLSNGCDE NYCCISCEDY LLDIELEEET PTLNDVTKDI  180
SCIGDGYLED QLADLDGRNY GTDVLKLSDA STSSDHDALP FDDVSTDKLL KVFRKMSGWK  240
NQDMRDKNFN FPKCSPESSE NEGDKVPPAS YQNLLTASTA FPSVFNFRRM PRVQHVKRRE  300
HIRWSFYKCL SSAAGETQFD CPDKWNSKTE PALPVEDRLI RRKVSEVQIK RSFRPSCVEL  360
SYFLPAWDVH SMLHGQSWCC PIQGHLSEDH RVNRAVDSDI RPAEAQVDPS GSLLDQSSDS  420
TSEDDWTIGT ETHRCNRKRK RNCWSTPEVL KLVEGVSKYG VGRWHGIKSV YFGSSVHRSS  480
TNLKDKWRNL VKASCRRSHK QRGVDAKPKR GQPSIPHHVL NRVRELAVIH PHSKLHRARV  540
LPTVFVASSS GVESDNRCFS VKDLELKY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340203.10.0PREDICTED: uncharacterized protein LOC102591958 isoform X1
TrEMBLM1AE300.0M1AE30_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000207900.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134241214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-19TRF-like 6